list of useful websites (not exhaustive, with focus on organizers tools)
Links related to small non-coding RNA bioinformatics
Published on 8 December 2021
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- Annotation and target databases:
- - miRBase: microRNA annotation database
- - TargetScan 8.0: Prediction of miRNA targets
- - TarBase v8: Collection of experimentally identified targets
- - mirdb: miRNA target prediction and functional annotations database
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- Others:
- - miRViz: use microRNA network to analyze microRNA data
- - metaMIR: microRNA framework to predict interactions in human between miRNAs and clusters of genes
- - BrumiR: algorithm to discover miRNAs directly and exclusively from sRNA-seq data
- Saarland softwares: collection of tools from A. Keller's lab
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