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list of useful websites (not exhaustive, with focus on organizers tools)

Links related to small non-coding RNA bioinformatics

Published on 8 December 2021
  • Annotation and target databases:
    • - MirGeneDB: curated microRNA Gene Database
    - miRBase: microRNA annotation database
  • - TargetScan 8.0: Prediction of miRNA targets
    • - TarBase v8: Collection of experimentally identified targets 
    • - mirdb: miRNA target prediction and functional annotations database





  • Others:
  • - miRViz: use microRNA network to analyze microRNA data
  • - metaMIR: microRNA framework to predict interactions in human between miRNAs and clusters of genes
  • - BrumiR: algorithm to discover miRNAs directly and exclusively from sRNA-seq data
    - Saarland softwares: collection of tools from A. Keller's lab